- Basic information
- CohesinDB ID: CDBP00415069
- Locus: chr21-24118629-24119151
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Data sourse: GSE120943, ENCSR404BPV, GSE98367
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Cell type: Neurons-H1, Monocytes, Macrophage
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.967
- Subunit: SMC3,SMC1
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: TSS
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
20% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"15_Quies": 90%,
"9_Het": 4%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: CHD8, SMARCA2, NME2, XBP1, SMAD3, CDK9, SMARCC1, HOXC5, YY1, RELA, ERG, NFIC, SMARCA4, CHD7, LHX2, DAXX, PBX4, RXRA, GATA3, GABPA, PBX3, ZSCAN4, NR3C1, TEAD1, ELF1, C11orf30, JUN, TCF12, NUP98-HOXA9, MAFK, EP300, BRD2, BHLHE40, TAF1, YAP1, JUND, TEAD4, ZNF316, FOSL2
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 3
- Related genes and loops