- Basic information
- CohesinDB ID: CDBP00415090
- Locus: chr21-24323102-24323887
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Data sourse: ENCSR198ZYJ, ENCSR404BPV, GSE73207
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Cell type: Neurons-H1, TF-1
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: SMC3,Rad21
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: TSS
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
25% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"15_Quies": 89%,
"9_Het": 9%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: PAX7, SMC1A, FOXA2, LDB1, POU5F1, NME2, MEIS2, GTF2B, FOXA1, HOXB13, ERG, MYC, SMARCA4, ARID1B, ARNT, GRHL3, GABPA, TAL1, GATA1, TEAD1, TRIM28, JUN, BCL11A, EP300, AR, GATA6, DPF2, GATA2, REST
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 7
- Related genes and loops