- Basic information
- CohesinDB ID: CDBP00415095
- Locus: chr21-24375089-24375798
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Data sourse: ENCSR000BLD, GSE126634, ENCSR000BLY, GSE105028, GSE103477, ENCSR917QNE, ENCSR000BTU, GSE93080, ENCSR000DZP, ENCSR000EAC, ENCSR000BKV, GSE120943, GSE116344, GSE145327, GSE98367, ENCSR000EHW, ENCSR000ECE, ENCSR000EHX, GSE97394, GSE55407, GSE155324, GSE68388, GSE83726, GSE50893
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Cell type: MDM, RH4, GM2610, GM19240, Liver, HuCC-T1, H9-hESC, GM2630, Ishikawa, GM12890, GM2255, K-562, GM18486, GM18526, H1-hESC, SNYDER, Monocytes, GM18505, Lymphoblast, GM12878, GM12891, GM2588, SK-N-SH, GM19239, GM19193, HAP1, GM19099, HUES64, Macrophage, GM12892, THP-1, GM19238, GM18951
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 12% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.633
- Subunit: SMC3,Rad21,SA1,SMC1
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CTCF binding site: CTCF
CTCF motif: True
- Genomic location: Intragenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: False
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
25% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 78%,
"9_Het": 20%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: DUX4, TAL1
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 7
- Related genes and loops