- Basic information
- CohesinDB ID: CDBP00415096
- Locus: chr21-24376556-24377241
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Data sourse: ENCSR000BLD, ENCSR000BTU, ENCSR000EAC, GSE138405, GSE126634, ENCSR000BLY, ENCSR000EHW, GSE138105, ENCSR000ECE, GSE152721, GSE50893, ENCSR000EDE, ENCSR000EHX, ENCSR198ZYJ, GSE103477, GSE62063, GSE25021, GSE108869, GSE97394
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Cell type: MCF-7, GM12892, H1-hESC, Hela-Kyoto, MDM, SNYDER, Neurons-H1, SLK, Ishikawa, GM12878, THP-1, Ramos, GM12891, HeLa-S3, SK-N-SH, GM19239, HAP1, HUES64
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 6% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.800
- Subunit: NIPBL,SA1,Rad21,SA2,SMC3
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: False
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
25% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 93%,
"9_Het": 7%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: ZFP69B, SMC1A, JUNB, TEAD1, RAD21, NCOR1, ZNF487, FOXA1, SRF, PHOX2B, CTCF, NUP98-HOXA9, HOXB13, STAG1, AHR
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 6
- Related genes and loops