- Basic information
- CohesinDB ID: CDBP00415103
- Locus: chr21-24418642-24419146
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Data sourse: ENCSR000BLD, ENCSR000BTU, ENCSR000BKV, GSE86191, GSE98367, ENCSR000BLY, ENCSR000ECE, GSE83726, GSE103477, GSE25021, GSE50893, GSE97394
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Cell type: MDM, RH4, GM2610, GM19240, GM2630, Ishikawa, K-562, GM18486, H1-hESC, SNYDER, GM12891, GM2588, SK-N-SH, GM19239, Macrophage, GM19099, MCF-7, GM12892, HUES64, HCT-116, GM19238, GM18951
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 6% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.756
- Subunit: SA1,Rad21,SMC1
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CTCF binding site: CTCF
CTCF motif: True
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: False
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
25% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"9_Het": 59%,
"15_Quies": 41%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: CTCF, RAD21, ZFX
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 2
- Related genes and loops