- Basic information
- CohesinDB ID: CDBP00415116
- Locus: chr21-24508879-24509635
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Data sourse: ENCSR198ZYJ, ENCSR404BPV
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Cell type: Neurons-H1
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.989
- Subunit: SMC3,Rad21
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
25% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 92%,
"9_Het": 7%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: ZNF384, ZNF263, SMAD3, ZNF334, ERG
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops
- Related gene:
- Related loop:
chr21:21000000-21025000~~chr21:24500000-24525000,
chr21:23400000-23425000~~chr21:24500000-24525000,
chr21:23850000-23875000~~chr21:24500000-24525000,
chr21:23853126-23855655~~chr21:24513395-24515016,
chr21:23967674-23970175~~chr21:24513395-24515016,
chr21:24112958-24114272~~chr21:24513419-24515155,
chr21:24374433-24376255~~chr21:24513242-24515218,
chr21:24374647-24377813~~chr21:24513418-24515189,
chr21:24374750-24375936~~chr21:24513478-24515130,
chr21:24375000-24400000~~chr21:24500000-24525000,
chr21:24376201-24377625~~chr21:24513279-24515208,
chr21:24376285-24377492~~chr21:24513242-24515218,
chr21:24418157-24419502~~chr21:24513242-24515218,
chr21:24500000-24525000~~chr21:25300000-25325000,
chr21:24513423-24515010~~chr21:25384975-25387237,
chr21:24513697-24514874~~chr21:25385247-25387032,