- Basic information
- CohesinDB ID: CDBP00415150
- Locus: chr21-24894181-24898586
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Data sourse: ENCSR000BLD, GSE206145-GSE177045, ENCSR230ZWH, GSE72082, GSE165895, GSE126634, GSE116868, ENCSR000BLY, GSE105028, GSE103477, GSE111537, GSE131606, GSE108869, ENCSR000EDW, GSE25021, ENCSR917QNE, ENCSR000EFJ, ENCSR000BTU, GSE115602, ENCSR000DZP, ENCSR000EAC, GSE139435, ENCSR000BKV, GSE115250, GSE122299, GSE138405, GSE93080, GSE76893, GSE101921, GSE135093, GSE152721, GSE206145-NatGen2015, ENCSR198ZYJ, GSE112028, GSE130135, ENCSR703TNG, GSE106870, GSE116344, GSE138105, GSE145327, GSE118494, ENCSR000EEG, GSE76815, GSE115248, ENCSR879KXD, ENCSR000BLS, ENCSR000EHW, GSE85526, ENCSR000ECE, GSE62063, ENCSR000BMY, ENCSR000EHX, ENCSR635OSG, GSE206145, GSE97394, GSE55407, ENCSR000BTQ, GSE38395, GSE129526, ENCSR000HPG, GSE155324, GSE38411, ENCSR000EDE, GSE68388, GSE83726, GSE126990, GSE50893, ENCSR000ECS, GSE131577
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Cell type: MDM, RH4, GM10847, GM2610, SLK, CVB-hiPSC, GM19240, CVI-hiPSC, Liver, TC-32, HuCC-T1, B-cell, H9-hESC, GM2630, Fibroblast, HEKn, THP-1, Ishikawa, Kelly, GM12890, HeLa-S3, hLCL, GM2255, IMR-90, BCBL-1, K-562, GM18486, DKO, HFFc6, GM18526, H1-hESC, SNYDER, GM18505, Leukemia-SEM, MB157, Lymphoblast, GM12878, GM12891, GM2588, SK-N-SH, GM19239, CNCCs-H9ESC, GM19193, HeLa-Tet-On, HAP1, GM19099, HUES64, MCF-7, GM12892, Ramos, Hela-Kyoto, HCT-116, HL-60, HEK293T, Hep-G2, MCF-10A, Neurons-H1, GM19238, CNCC-WT33iPSC, OCI-AML-3, GM18951
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 38% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.311
- Subunit: NIPBL,SA1,Rad21,SMC1,SMC3ac,SA2,Mau2,SMC3
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CTCF binding site: CTCF
CTCF motif: True
- Genomic location: TSS,Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
30% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 84%,
"7_Enh": 7%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: MAFG, MAFF, C11orf30, MAFK, ZNF316
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops
- Related gene:
- Related loop:
chr21:21000000-21025000~~chr21:24875000-24900000,
chr21:24525000-24550000~~chr21:24875000-24900000,
chr21:24575000-24600000~~chr21:24875000-24900000,
chr21:24875000-24900000~~chr21:25025000-25050000,
chr21:24875000-24900000~~chr21:25300000-25325000,
chr21:24875000-24900000~~chr21:25325000-25350000,
chr21:24875000-24900000~~chr21:25350000-25375000,
chr21:24875000-24900000~~chr21:25375000-25400000,
chr21:24894830-24897390~~chr21:25038993-25040888,
chr21:24894830-24897390~~chr21:25215384-25217157,
chr21:24894830-24897390~~chr21:25312872-25315048,
chr21:24894830-24897390~~chr21:25384467-25387269,
chr21:24894830-24897394~~chr21:25039002-25040942,
chr21:24894830-24897394~~chr21:25312901-25315101,
chr21:24894830-24897394~~chr21:25385024-25387052,
chr21:24895174-24897331~~chr21:25312989-25315108,
chr21:24895217-24897409~~chr21:25038938-25040859,
chr21:24895217-24897409~~chr21:25384906-25387309,
chr21:24895246-24897306~~chr21:25385187-25387188,
chr21:24895257-24897346~~chr21:25038912-25040890,
chr21:24895257-24897346~~chr21:25312934-25315135,
chr21:24895257-24897346~~chr21:25384844-25387316,
chr21:24895308-24897338~~chr21:25038912-25040868,
chr21:24895365-24897344~~chr21:25313202-25314755,
chr21:24895401-24897292~~chr21:25385277-25387061,
chr21:24895404-24897444~~chr21:25038898-25041036,
chr21:24895404-24897444~~chr21:25312967-25315286,
chr21:24895404-24897444~~chr21:25384540-25387027,
chr21:24895412-24897320~~chr21:25039014-25040785,
chr21:24895412-24897320~~chr21:25215564-25217094,
chr21:24895412-24897320~~chr21:25312932-25315067,
chr21:24895412-24897374~~chr21:25038926-25041026,
chr21:24895412-24897374~~chr21:25312992-25315465,
chr21:24895412-24897374~~chr21:25384467-25386981,
chr21:24895417-24897339~~chr21:25313184-25314751,
chr21:24895417-24897339~~chr21:25385234-25387033,
chr21:24895431-24897310~~chr21:25038859-25040781,
chr21:24895431-24897366~~chr21:25038878-25040962,
chr21:24895431-24897366~~chr21:25312835-25315056,
chr21:24895431-24897366~~chr21:25384794-25387223,
chr21:24895435-24897297~~chr21:25385320-25387052,
chr21:24895436-24897312~~chr21:25038928-25040817,
chr21:24895436-24897312~~chr21:25385038-25387061,
chr21:24895439-24897330~~chr21:25039058-25040813,
chr21:24895454-24897237~~chr21:25312980-25314897,
chr21:24895454-24897362~~chr21:25313390-25314757,
chr21:24895454-24897362~~chr21:25385185-25387028,
chr21:24895469-24897373~~chr21:25039058-25040876,
chr21:24895469-24897373~~chr21:25312888-25315096,
chr21:24895473-24897247~~chr21:25039094-25040627,
chr21:24895480-24897346~~chr21:25313190-25314774,
chr21:24895510-24897368~~chr21:25038960-25041269,
chr21:24895510-24897368~~chr21:25312968-25315386,
chr21:24895510-24897368~~chr21:25384420-25387034,
chr21:24895560-24897204~~chr21:25038968-25040820,
chr21:24895560-24897204~~chr21:25313326-25315106,
chr21:24895563-24897074~~chr21:25313003-25315176,
chr21:24895582-24897226~~chr21:25313215-25314816,
chr21:24895582-24897226~~chr21:25384605-25386845,
chr21:24895665-24896948~~chr21:25039050-25040629,
chr21:24895738-24897210~~chr21:25038968-25040729,
chr21:24900000-24925000~~chr21:25300000-25325000,
chr21:24900000-24925000~~chr21:25375000-25400000,