Deatailed information for cohesin site CDBP00415175

Check detailed explainations here

  • Basic information
  • CohesinDB ID: CDBP00415175
  • Locus: chr21-25139201-25139936
  • Data sourse: ENCSR198ZYJ, ENCSR404BPV
  • Cell type: Neurons-H1
  • DNA Sequence of binding site: UCSC hg38
  • Cohesin category
  • Peak occupancy ratio: 1% samples have this site.
  • Cell specificity (0: conserved, 1: cell type specific): 0.989
  • Subunit: SMC3,Rad21
  • CTCF binding site: non-CTCF CTCF motif: False
  • Genomic location: TES
  • 3D genome
  • TAD boundary: Boundary
  • Chromatin hubs: Hub
  • Hi-C loops: True Hi-ChIP loops: False ChIA-PET loops: True
  • Compartment: 31% Hi-C samples shows Compartment A
  • Cis-regulatory elements
  • Enhancer (Fantom5): non-Enhancer
  • Super enhancer (SEdb): False
  • Chromatin annotation: "15_Quies": 92%, "9_Het": 8%,
    Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
  • Co-bound Transcriptional factors: RELA, TRP47, SP140, ZBTB48, WT1
  • Target gene symbol (double-evidenced CRMs): .
  • Function elements
  • Human SNPs: .
  • Number of somatic mutations (coding): 0
  • Number of somatic mutations (non-coding): 6
  • Related genes and loops
  • Related gene:
  • Related loop: chr21:25125000-25150000~~chr21:25300000-25325000, chr21:25125000-25150000~~chr21:25550000-25575000,
Tools:
  • Assay

refGene

LINC01689LINC01684LINC01684LINC01684LINC01692LINC00158MIR155HGLINC00515MRPL39MRPL39JAM2JAM2JAM2JAM2ATP5PFATP5PFATP5PFATP5PFATP5PFATP5PFATP5PFGABPAGABPAAPPAPPAPPAPPAPPAPPAPPAPPAPPAPPAPPCYYR1-AS1CYYR1-AS1CYYR1CYYR1CYYR1
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Ruler

chr21q21.2q21.323700K23800K23900K24000K24100K24200K24300K24400K24500K24600K24700K24800K24900K25000K25100K25200K25300K25400K25500K25600K25700K25800K25900K26000K26100K26200K26300K26400K26500K26600K

Cohesin site CDBP00415175

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CDBP00415175 regulated genes

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Related cohesin loop

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