- Basic information
- CohesinDB ID: CDBP00415182
- Locus: chr21-25183879-25184087
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Data sourse: GSE206145-NatGen2015, GSE86191
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Cell type: Fibroblast, HCT-116
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 0% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: Rad21,SA2
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
31% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"15_Quies": 87%,
"9_Het": 9%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: GATA6, NEUROD1, ONECUT1, CEBPA, TOP2A, RAD21, ZFX, BRD4, DUX4, OTX2, SOX11, CDK8
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops
- Related gene:
- Related loop:
chr21:17775000-17800000~~chr21:25175000-25200000,
chr21:25025000-25050000~~chr21:25175000-25200000,
chr21:25175000-25200000~~chr21:25300000-25325000,
chr21:25175000-25200000~~chr21:25375000-25400000,
chr21:25175000-25200000~~chr21:25475000-25500000,
chr21:25175000-25200000~~chr21:25550000-25575000,
chr21:25175526-25177901~~chr21:25188035-25189709,
chr21:25175735-25177434~~chr21:25188189-25189467,
chr21:25176136-25177376~~chr21:25187122-25189516,
chr21:25185361-25187101~~chr21:25215615-25217170,
chr21:25188035-25189709~~chr21:25297853-25299743,