- Basic information
- CohesinDB ID: CDBP00415192
- Locus: chr21-25254396-25255340
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Data sourse: GSE115248, GSE126634, ENCSR404BPV, GSE152721, ENCSR198ZYJ, ENCSR000EHX
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Cell type: Kelly, Neurons-H1, HAP1, SK-N-SH
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 2% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.956
- Subunit: SMC3,Rad21,SMC1
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: False
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
35% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"15_Quies": 89%,
"9_Het": 8%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: FOXA2, MYCN, TOP2A, NME2, FOXA1, TWIST1, HNF4G, KDM1A, NEUROD1, EOMES, SMARCA4, ISL1, GRHL3, OTX2, GATA3, RCOR1, HAND2, ESR1, PITX3, SETDB1, EBF3, PHOX2B, T, EP300, AR, GATA6, GATA2, REST, TEAD4, TBX2
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops