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Basic information

CohesinDB ID: CDBP00415199

Locus: chr21-25307318-25307813

Data sourse: GSE206145-NatGen2015, ENCSR000EHX, ENCSR000BLY, GSE165895

Cell type: Fibroblast, SK-N-SH, HFFc6

DNA Sequence of binding site: UCSC hg38

Cohesin category

Peak occupancy ratio: 1% samples have this site.

Cell specificity (0: conserved, 1: cell type specific): 0.967

Subunit: Mau2,Rad21,SMC1

CTCF binding site: CTCF CTCF motif: False

Genomic location: Intragenic

3D genome

TAD boundary: Boundary

Chromatin hubs: Hub

Hi-C loops: True Hi-ChIP loops: True ChIA-PET loops: True

Compartment: 35% Hi-C samples shows Compartment A

Cis-regulatory elements

Enhancer (Fantom5): non-Enhancer

Super enhancer (SEdb): True

Chromatin annotation: "15_Quies": 78%, "9_Het": 12%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).

Co-bound Transcriptional factors: PGR, FOXA2, DUX4, SMAD3, FOXA1, HOXC5, ERG, NFIC, MYC, RAD21, PBX4, GRHL3, NKX2-1, GATA3, MAX, PBX3, FOS, CDK8, RCOR1, HAND2, BACH2, NR3C1, EBF3, PHOX2B, JUN, TCF12, MAFK, EP300, AR, BRD4, JUND, TEAD4, FOSL2

Target gene symbol (double-evidenced CRMs): .

Function elements

Human SNPs: .

Number of somatic mutations (coding): 0

Number of somatic mutations (non-coding): 0

Related genes and loops

Related gene:

eachgene

Deatailed information for cohesin site CDBP00415199