Browse_each

Basic information

CohesinDB ID: CDBP00415201

Locus: chr21-25313268-25315080

Data sourse: ENCSR000BLD, ENCSR230ZWH, GSE72082, GSE126634, ENCSR000BLY, ENCSR404BPV, GSE105028, GSE103477, GSE111537, GSE131606, GSE108869, GSE25021, ENCSR917QNE, ENCSR000EFJ, ENCSR000BTU, GSE139435, ENCSR000DZP, ENCSR000EAC, GSE165895, GSE93080, GSE138405, GSE101921, GSE135093, GSE152721, GSE206145-NatGen2015, ENCSR198ZYJ, GSE112028, GSE138105, ENCSR703TNG, GSE145327, ENCSR000EEG, GSE76815, ENCSR000EHW, GSE155828, ENCSR000ECE, GSE206145, ENCSR000BMY, ENCSR000EHX, GSE97394, GSE55407, ENCSR000BTQ, ENCSR167MTG, ENCSR000HPG, GSE155324, ENCSR000EDE, GSE126990, GSE50893, GSE126755, ENCSR000ECS, GSE131577

Cell type: MDM, GM10847, GM2610, SLK, GM19240, OCI-AML-3, Liver, Transformed-RPE1, B-cell, H9-hESC, GM2630, RPE, Fibroblast, Ishikawa, GM12890, HeLa-S3, GM2255, IMR-90, GM18486, DKO, HFFc6, GM18526, H1-hESC, SNYDER, Leukemia-SEM, Lymphoblast, GM12878, GM12891, GM2588, SK-N-SH, GM19239, HeLa-Tet-On, GM19193, HAP1, GM19099, HUES64, MCF-7, GM12892, THP-1, Hela-Kyoto, HL-60, MCF-10A, Hep-G2, Neurons-H1, GM19238, CNCC-WT33iPSC, Neutrophil, GM18951

DNA Sequence of binding site: UCSC hg38

Cohesin category

Peak occupancy ratio: 30% samples have this site.

Cell specificity (0: conserved, 1: cell type specific): 0.467

Subunit: NIPBL,SA1,Rad21,SMC1,SA2,Mau2,SMC3

CTCF binding site: CTCF CTCF motif: True

Genomic location: Intragenic

3D genome

TAD boundary: Boundary

Chromatin hubs: Hub

Hi-C loops: True Hi-ChIP loops: True ChIA-PET loops: True

Compartment: 35% Hi-C samples shows Compartment A

Cis-regulatory elements

Enhancer (Fantom5): non-Enhancer

Super enhancer (SEdb): True

Chromatin annotation: "15_Quies": 85%, "7_Enh": 7%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).

Co-bound Transcriptional factors: POU2F2, CBX5, SMC1A, FOXA2, CHD2, TOP2A, TEAD4, STAG2, NME2, FOXA1, SRF, MEF2C, ZNF654, CDK9, TRIM22, HOXB13, RELA, ZBTB2, MYC, GATA4, RAD21, ISL1, GATA3, GABPA, STAT3, PAX5, MAX, PBX3, CDK8, HAND2, CEBPB, SCRT2, STAG1, ESR1, EBF3, PHOX2B, CTCF, TCF12, ELF3, EP300, NIPBL, SPI1, JUN, GATA6, GATA2, IRF4, FLI1, DRAP1, BRD4, SCRT1, JUND, SMC1, MRTFB, SMC3, MLLT1, FOSL2

Target gene symbol (double-evidenced CRMs): .

Function elements

Human SNPs: .

Number of somatic mutations (coding): 0

Number of somatic mutations (non-coding): 0

Related genes and loops

Related gene:

eachgene

Deatailed information for cohesin site CDBP00415201