- Basic information
- CohesinDB ID: CDBP00415202
- Locus: chr21-25316959-25317326
-
Data sourse: GSE206145, GSE116344
-
Cell type: RPE, RH4
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 0% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: Rad21
-
CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
-
Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
35% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
-
Chromatin annotation:
"15_Quies": 93%,
"9_Het": 3%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
-
Co-bound Transcriptional factors: .
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops
- Related gene:
- Related loop:
chr21:18250000-18275000~~chr21:25300000-25325000,
chr21:21000000-21025000~~chr21:25300000-25325000,
chr21:22775000-22800000~~chr21:25300000-25325000,
chr21:22800000-22825000~~chr21:25300000-25325000,
chr21:23075000-23100000~~chr21:25300000-25325000,
chr21:23125000-23150000~~chr21:25300000-25325000,
chr21:23300000-23325000~~chr21:25300000-25325000,
chr21:23375000-23400000~~chr21:25300000-25325000,
chr21:23525000-23550000~~chr21:25300000-25325000,
chr21:23700000-23725000~~chr21:25300000-25325000,
chr21:23850000-23875000~~chr21:25300000-25325000,
chr21:23900000-23925000~~chr21:25300000-25325000,
chr21:24050000-24075000~~chr21:25300000-25325000,
chr21:24250000-24275000~~chr21:25300000-25325000,
chr21:24500000-24525000~~chr21:25300000-25325000,
chr21:24550000-24575000~~chr21:25300000-25325000,
chr21:24875000-24900000~~chr21:25300000-25325000,
chr21:24894830-24897390~~chr21:25312872-25315048,
chr21:24894830-24897394~~chr21:25312901-25315101,
chr21:24895174-24897331~~chr21:25312989-25315108,
chr21:24895257-24897346~~chr21:25312934-25315135,
chr21:24895365-24897344~~chr21:25313202-25314755,
chr21:24895404-24897444~~chr21:25312967-25315286,
chr21:24895412-24897320~~chr21:25312932-25315067,
chr21:24895412-24897374~~chr21:25312992-25315465,
chr21:24895417-24897339~~chr21:25313184-25314751,
chr21:24895431-24897366~~chr21:25312835-25315056,
chr21:24895454-24897237~~chr21:25312980-25314897,
chr21:24895454-24897362~~chr21:25313390-25314757,
chr21:24895469-24897373~~chr21:25312888-25315096,
chr21:24895480-24897346~~chr21:25313190-25314774,
chr21:24895510-24897368~~chr21:25312968-25315386,
chr21:24895560-24897204~~chr21:25313326-25315106,
chr21:24895563-24897074~~chr21:25313003-25315176,
chr21:24895582-24897226~~chr21:25313215-25314816,
chr21:24900000-24925000~~chr21:25300000-25325000,
chr21:25025000-25050000~~chr21:25300000-25325000,
chr21:25038898-25041036~~chr21:25312967-25315286,
chr21:25038960-25041269~~chr21:25312968-25315386,
chr21:25050000-25075000~~chr21:25300000-25325000,
chr21:25125000-25150000~~chr21:25300000-25325000,
chr21:25175000-25200000~~chr21:25300000-25325000,
chr21:25282960-25285079~~chr21:25312835-25315056,
chr21:25300000-25325000~~chr21:25525000-25550000,
chr21:25300000-25325000~~chr21:26800000-26825000,
chr21:25300000-25325000~~chr21:27200000-27225000,