- Basic information
- CohesinDB ID: CDBP00415238
- Locus: chr21-25486277-25488381
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Data sourse: GSE38395, GSE93080, ENCSR000EAC, ENCSR000DZP, ShirahigeLab, ShirahigeLab-NatGen2015, ENCSR000BMY, GSE120943, GSE103477, GSE50893
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Cell type: MDM, GM2610, GM19240, B-cell, GM2630, Fibroblast, GM12890, hLCL, GM2255, GM18526, SNYDER, Monocytes, GM12878, GM12891, GM2588, GM19239, THP-1, GM12892, GM19238
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 7% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.789
- Subunit: NIPBL,SA1,Rad21,SMC1,SA2,Mau2,SMC3
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
35% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 80%,
"7_Enh": 11%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: PGR, CBX5, SOX2, FOXA1, HDGF, TSC22D4, BMI1, NFIC, RUNX3, PRDM1, ATF4, CBFB, PAX5, BACH2, MAF, JMJD1C, KLF5, ELF1, BCLAF1, TRIM28, ZNF217, SMAD5, LMO2, TP73, MLL, JUN, TCF12, EP300, GATA6, DPF2, TRIM24, IRF4, RAD51, RBPJ, EED, POU2F2, POU5F1, TOP2A, MTA2, STAT1, SRF, NBN, ARID3A, ERG, PBX1, ZNF597, NFKB2, MYC, RAD21, RXRA, BATF3, GABPA, STAT3, IKZF1, DACH1, VDR, NR3C1, CEBPB, STAT5B, KMT2A, CREB1, TBL1XR1, SPI1, IRF1, GATA2, GATAD2B, SREBF1, DRAP1, RELB, RUNX1, SMC1A, BCL6, CEBPA, TRIM22, SMARCC1, MEF2A, ZBTB2, ZNF384, NOTCH1, ARNT, BACH1, ATF2, FOXM1, ETV6, PBX3, FOS, CDK8, MED1, PML, MYB, SMAD1, EVI1, STAT5A, BCL11A, NIPBL, SP1, REST, ATF7, HOXA9, BCOR, TCF3, MLLT1, NFATC3, MEF2B, ZNF207, MTA3, CREM, MEIS1, NFATC1, EBF1, E2F8, FOXA2, GTF2B, ZBED1, MEF2C, TCF7, CDK9, BCL3, RELA, TARDBP, JUNB, SKIL, GATA3, BATF, TLE3, TCF7L2, NR2F1, TP53, PKNOX1, ZNF687, MED, NFKB1, TBX21, BHLHE40, AR, TAF1, ZBTB40, RXR, RNF2, IKZF2, BRD4, JUND, ZNF24, AHR
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 18
- Related genes and loops