- Basic information
- CohesinDB ID: CDBP00415239
- Locus: chr21-25491191-25491655
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Data sourse: ShirahigeLab, ENCSR000BMY
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Cell type: GM12878, B-cell
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: Mau2,Rad21
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
35% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 89%,
"9_Het": 3%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: FOXA2, NKX2-2, CREM, SIN3A, GTF2B, FOXA1, BCL3, YY1, JUNB, NFIC, MYC, GATA4, RUNX3, PBX4, NKX2-1, ATF2, BATF3, BATF, GATA3, PRDM9, FOXM1, FOS, MED1, BACH2, PML, BCLAF1, TERF1, ZMYM3, USF2, ELF3, AR, DPF2, GATA2, FOSL2, BRD4, EED
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 2
- Related genes and loops