- Basic information
- CohesinDB ID: CDBP00415240
- Locus: chr21-25494838-25495351
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Data sourse: ShirahigeLab, GSE50893, ENCSR000DZP, GSE93080
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Cell type: GM12892, GM2610, GM12878, GM12891, B-cell
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.944
- Subunit: NIPBL,SMC3,Mau2,SA1
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
35% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 94%,
"9_Het": 2%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: POU2F2, MEF2B, SMC1A, GTF2B, DUX4, MEF2A, RELA, MYC, HIF1A, BATF, IKZF1, MED1, BCLAF1, ZMYM3, EZH2, ZNF217, TCF12, NIPBL, BCL11A, TBX21, SPI1, IRF4, ZNF146, NCOR1, BRD4, TCF3, RELB, ZNF24, RBPJ, EED
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 7
- Related genes and loops