- Basic information
- CohesinDB ID: CDBP00415243
- Locus: chr21-25505450-25506113
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Data sourse: GSE50893, ENCSR000DZP, ENCSR000BMY
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Cell type: GM12892, GM2630, SNYDER, GM2610, GM19240, GM12878, GM12891, GM2588, GM19238, GM19239, GM18486
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 4% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.878
- Subunit: SMC3,Rad21,SA1
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: False
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
61% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 92%,
"7_Enh": 3%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: POU2F2, CHD8, SMC1A, ZFX, GTF2B, YY1, NFIC, MYC, RUNX2, RUNX3, GRHL3, SKIL, ARNT, BATF, TAL1, PAX5, MED1, ZNF121, KLF6, ZMYM3, LMO2, HNF1B, SETDB1, CTCF, ZHX2, NIPBL, SPI1, AR, PAX8, BRD4, AHR, EED
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 4
- Related genes and loops