- Basic information
- CohesinDB ID: CDBP00415258
- Locus: chr21-25558119-25558474
-
Data sourse: GSE206145-NatGen2015
-
Cell type: Fibroblast
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 0% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.989
- Subunit: Mau2,SA2
-
CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: TSS
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
-
Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
61% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
-
Chromatin annotation:
"15_Quies": 91%,
"5_TxWk": 6%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
-
Co-bound Transcriptional factors: AR, ZNF384, NR3C1, CEBPB, ZNF750, GATA2, RUNX2, SIX2, PBX4, ESR1, FOXA1, PHOX2B
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops
- Related gene:
- Related loop:
chr21:25125000-25150000~~chr21:25550000-25575000,
chr21:25175000-25200000~~chr21:25550000-25575000,
chr21:25400000-25425000~~chr21:25550000-25575000,
chr21:25420540-25423403~~chr21:25560910-25563164,
chr21:25420678-25422766~~chr21:25560847-25563165,
chr21:25420712-25422853~~chr21:25560936-25563164,
chr21:25420779-25423371~~chr21:25560899-25563117,
chr21:25420786-25422730~~chr21:25559998-25563081,
chr21:25420833-25423377~~chr21:25559917-25563022,
chr21:25420835-25423361~~chr21:25560463-25563063,
chr21:25420928-25423279~~chr21:25561015-25562774,
chr21:25420945-25422989~~chr21:25561564-25562715,
chr21:25423746-25424928~~chr21:25560899-25563117,
chr21:25425000-25450000~~chr21:25550000-25575000,
chr21:25450000-25475000~~chr21:25550000-25575000,
chr21:25509410-25510674~~chr21:25560899-25563117,
chr21:25509451-25511650~~chr21:25559917-25563022,