- Basic information
- CohesinDB ID: CDBP00415383
- Locus: chr21-26038484-26038973
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Data sourse: GSE76815, GSE86191
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Cell type: HCT-116, SK-N-SH
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: Rad21
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
68% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"5_TxWk": 76%,
"15_Quies": 18%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: NANOG, FOXA2, POU5F1, CEBPA, ZFX, FOXA1, GATA4, OSR2, EOMES, RAD21, SP140, ARNT, CHD7, ATF2, ZNF189, ZNF629, ZNF680, LMO2, RBM22, AR, GATA6, GATA2, ZNF366, JUND, ZNF490, HEXIM1-CDK9, PRDM6
- Target gene symbol (double-evidenced CRMs): APP
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 24
- Number of somatic mutations (non-coding): 0
- Related genes and loops