Deatailed information for cohesin site CDBP00415478
Check detailed explainations here
- Basic information
- CohesinDB ID: CDBP00415478
- Locus: chr21-26365967-26366211
- Data sourse: GSE68388
- Cell type: HuCC-T1
- DNA Sequence of binding site: UCSC hg38
- Cohesin category
- Peak occupancy ratio: 0% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.989
- Subunit: SMC1
- CTCF binding site: non-CTCF CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: non-Hub
- Hi-C loops: True Hi-ChIP loops: False ChIA-PET loops: True
- Compartment: 54% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
-
Chromatin annotation:
"15_Quies": 92%,
"7_Enh": 4%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2). - Co-bound Transcriptional factors: POU2F2, HNF1A, XBP1, WT1, ERG3, ERG2, KDM1A, HOXC5, JUNB, RUNX2, PBX4, DAXX, NKX2-1, FOS, GATA1, RCOR1, KLF4, HNF1B, OCA2, EGR2, ARID1A
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops
- Related gene:
- Related loop: chr21:26250000-26275000~~chr21:26350000-26375000,
Tools:
- Assay
