- Basic information
- CohesinDB ID: CDBP00415558
- Locus: chr21-26776451-26777490
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Data sourse: GSE138405, GSE206145-NatGen2015, ENCSR000EDE, GSE126990, ENCSR000ECS, GSE165895
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Cell type: Hela-Kyoto, HeLa-S3, Fibroblast, HFFc6
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 2% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.956
- Subunit: Rad21,SMC1,SA2,Mau2,SMC3
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: False
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
41% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 81%,
"7_Enh": 11%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: PGR, FOXA2, POU5F1, SOX2, SMAD3, MAFF, BAHD1, SMARCC1, JUNB, MYC, RUNX2, GATA4, RAD21, LHX2, PBX4, GATA3, BATF3, STAT3, MAX, ZSCAN4, GATA1, FOS, MED1, KLF4, CEBPB, NR3C1, TEAD1, NFE2L2, ZNF334, MYOD1, JUN, TCF12, MAFK, EP300, AR, GATA2, YAP1, RFX5, SIX2, ZHX1, FLI1, DEK, BRD4, JUND, MRTFB, TEAD4, FOSL2
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 12
- Related genes and loops