- Basic information
- CohesinDB ID: CDBP00415563
- Locus: chr21-26798920-26799710
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Data sourse: ENCSR000EFJ, GSE116344, GSE138405, GSE206145
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Cell type: Hela-Kyoto, RH4, IMR-90, HEK293T
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.956
- Subunit: Rad21,SA2
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: False
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
41% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"15_Quies": 59%,
"5_TxWk": 22%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: FOXO1, FOSL1, ZNF660, ZSCAN5C, SOX2, NME2, XBP1, PATZ1, FOXA1, ZNF101, ZFHX2, ZNF529, INSM2, NFIC, ATF3, ZFP64, ZNF362, CHD7, ZBTB44, PRDM1, IKZF3, ZNF189, PAX5, ZSCAN4, MZF1, TP63, MITF, ZNF320, ZNF736, ZNF467, CDX2, MYOG, ZNF629, ZNF586, ELF1, TRIM28, ZNF121, ETV1, ZNF573, NFE2L2, KLF10, ESR1, ZNF561, CTCF, TCF12, JUN, EP300, BAF155, ARID5B, LMO1, ZNF577, PRDM4, TRIM24, RFX5, DEK, E2F1, ZNF528, TEAD4, GTF2F1, RBPJ, GLIS1, POU2F2, CHD8, NANOG, BRD3, MYCN, ZNF263, CDK7, POU5F1, ZNF317, ZBTB17, ZBTB48, DUX4, STAT1, ZSCAN21, ERF, SRF, ERG2, HIC1, TBP, HOXC5, ZBTB21, ERG, ASCL1, ZNF626, MYC, SMARCA4, TSHZ1, ZNF2, RAD21, FOXP2, ZNF24, RXRA, NKX2-1, GABPA, STAT3, NKX3-1, ZNF398, RCOR1, ZNF639, VDR, NR3C1, CEBPB, ESRRA, CREB1, EZH2, ZNF669, KLF8, FEZF1, EBF3, ZHX2, ZNF664, KLF17, GATA2, INTS13, SIX2, FLI1, MRTFB, ZNF76, NCOA2, ZNF554, MYF5, RUNX1, NKX2-2, ZNF707, ZNF335, AFF4, ZFX, SIN3A, SMAD3, ZBTB12, ZFP37, ERG3, ZNF513, SMARCC1, PRDM10, ZNF549, CREBBP, ZNF384, NOTCH1, ZNF35, RUNX2, CDK6, GATA4, OSR2, ZNF184, ZSCAN30, SP3, NRF1, PBX4, ARNT, ZBTB10, DAXX, HMGB2, ATF2, ZEB2, ZNF518A, FOXM1, PBX3, ZNF10, SMARCB1, CDK8, CHD1, FOS, MAFB, MED1, SP2, ZEB1, SPDEF, ZXDB, MYB, SCRT2, PIAS1, ZNF558, ZNF331, ZNF680, ZBTB18, KLF9, SETDB1, ZNF37A, MAFK, SP1, NIPBL, BCL11A, REST, ZHX1, ATF7, PHIP, FOXP1, PRDM6, ZNF623, SMC3, ELL2, NCOR2, ZNF394, NELFA, PPARG, FOXA2, CHD2, SS18, ZNF600, ZNF692, GTF2B, WT1, MAFF, ZSCAN16, FOXF1, ZNF30, ZNF574, HOXB13, ZNF580, KDM1A, YY1, RELA, JUNB, NEUROD1, ZNF510, ISL1, ZIC2, HIF1A, OTX2, GATA3, TAL1, MAX, NRIP1, ZNF143, ZNF449, TLE3, ZFP69B, BCL11B, SP7, NCOA3, NR2F2, GFI1B, KLF4, TCF7L2, NEUROG2, TP53, ZBTB6, ZNF547, ZNF334, BCL6B, MYOD1, EGR2, NFKB1, BRD2, ZNF843, ELF3, BHLHE40, PAX3-FOXO1, AR, ZNF324, ZNF366, ZBTB42, EGR1, ZNF280D, HSF1, ZBTB26, MYNN, BRD4, SCRT1, JUND, MAZ, ZSCAN23, BRCA1, AHR, FOSL2
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 9
- Related genes and loops