- Basic information
- CohesinDB ID: CDBP00415586
- Locus: chr21-26877109-26877629
-
Data sourse: ENCSR000EHX, ENCSR000BLY
-
Cell type: SK-N-SH
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 0% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.989
- Subunit: Rad21
-
CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
-
Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
41% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
-
Chromatin annotation:
"15_Quies": 90%,
"14_ReprPCWk": 5%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
-
Co-bound Transcriptional factors: POU2F2, DUX4, CDK9, TWIST1, YY1, ATF3, NFIC, RAD21, ARNT, HIF1A, NRF1, TCF4, GATA3, STAT3, PBX3, SPIB, CDK8, RCOR1, CEBPG, JMJD1C, CEBPB, MYB, KMT2A, MLL, PITX3, EBF3, ELF3, TCF12, SPI1, EP300, GATA6, GATA2, TRIM24, IRF4, FLI1, NCOR1, BRD4, FOXP1, SMC3, KMT2B
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 6
- Related genes and loops
- Related gene:
- Related loop:
chr21:26850000-26875000~~chr21:26950000-26975000,
chr21:26850000-26875000~~chr21:27025000-27050000,
chr21:26850000-26875000~~chr21:27075000-27100000,
chr21:26850000-26875000~~chr21:27175000-27200000,
chr21:26850000-26875000~~chr21:27200000-27225000,
chr21:26850000-26875000~~chr21:27225000-27250000,
chr21:26850000-26875000~~chr21:27300000-27325000,
chr21:26850000-26875000~~chr21:27350000-27375000,
chr21:26850000-26875000~~chr21:27400000-27425000,
chr21:26850000-26875000~~chr21:27425000-27450000,
chr21:26850000-26875000~~chr21:27450000-27475000,
chr21:26850000-26875000~~chr21:27475000-27500000,
chr21:26850000-26875000~~chr21:27550000-27575000,
chr21:26850000-26875000~~chr21:27575000-27600000,
chr21:26850000-26875000~~chr21:27650000-27675000,
chr21:26850000-26875000~~chr21:27675000-27700000,
chr21:26850000-26875000~~chr21:27700000-27725000,
chr21:26850000-26875000~~chr21:28025000-28050000,
chr21:26850000-26875000~~chr21:28050000-28075000,
chr21:26850000-26875000~~chr21:28300000-28325000,
chr21:26850000-26875000~~chr21:28325000-28350000,
chr21:26850000-26875000~~chr21:28500000-28525000,
chr21:26850000-26875000~~chr21:28550000-28575000,
chr21:26850000-26875000~~chr21:28725000-28750000,
chr21:26850000-26875000~~chr21:28750000-28775000,
chr21:26850000-26875000~~chr21:28925000-28950000,
chr21:26875000-26900000~~chr21:27200000-27225000,
chr21:26875000-26900000~~chr21:27300000-27325000,
chr21:26875000-26900000~~chr21:27325000-27350000,
chr21:26875000-26900000~~chr21:27550000-27575000,
chr21:26875000-26900000~~chr21:27675000-27700000,
chr21:26875000-26900000~~chr21:28225000-28250000,
chr21:26880663-26882691~~chr21:27564041-27565758,
chr21:26880663-26882691~~chr21:27700355-27702199,
chr21:26880663-26882691~~chr21:27802305-27803923,
chr21:26880679-26882832~~chr21:27699929-27702131,
chr21:26880713-26882657~~chr21:27563683-27565992,
chr21:26880725-26882738~~chr21:27476214-27477477,
chr21:26880733-26882858~~chr21:27699551-27702135,
chr21:26880733-26882858~~chr21:27703428-27704636,
chr21:26880766-26882640~~chr21:27563925-27566163,
chr21:26880869-26882702~~chr21:27465683-27467004,
chr21:26880869-26882702~~chr21:27564068-27565806,
chr21:26880869-26882702~~chr21:27700318-27702132,
chr21:26880905-26882638~~chr21:27700358-27702051,
chr21:26880923-26882670~~chr21:27700028-27702259,
chr21:26880942-26882759~~chr21:26960974-26962592,
chr21:26880999-26882442~~chr21:27700129-27702131,
chr21:26881095-26882278~~chr21:27802335-27803696,