- Basic information
- CohesinDB ID: CDBP00415609
- Locus: chr21-26977695-26978101
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Data sourse: GSE206145-NatGen2015
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Cell type: Fibroblast
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.989
- Subunit: Mau2
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
40% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 86%,
"14_ReprPCWk": 5%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: AR, MED1, FOS, FOXO1, CEBPB, RUNX2, FOXA2, TEAD1, SCRT2, TOP2A, ARNT, SCRT1, MAFK, FOXA1, STAT3, ERG2, HOXB13
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 1
- Related genes and loops
- Related gene:
- Related loop:
chr21:26750000-26775000~~chr21:26950000-26975000,
chr21:26850000-26875000~~chr21:26950000-26975000,
chr21:26950000-26975000~~chr21:27200000-27225000,
chr21:26950000-26975000~~chr21:27350000-27375000,
chr21:26950000-26975000~~chr21:27450000-27475000,
chr21:26950000-26975000~~chr21:27550000-27575000,
chr21:26950000-26975000~~chr21:27675000-27700000,
chr21:26950000-26975000~~chr21:27700000-27725000,
chr21:26950000-26975000~~chr21:28325000-28350000,
chr21:26950000-26975000~~chr21:28725000-28750000,
chr21:26950000-26975000~~chr21:28750000-28775000,
chr21:26975000-27000000~~chr21:27550000-27575000,