- Basic information
- CohesinDB ID: CDBP00415614
- Locus: chr21-27016457-27016966
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Data sourse: GSE138405, GSE25021
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Cell type: MCF-7, Hela-Kyoto
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 0% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: SA1,SA2
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
38% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 91%,
"9_Het": 4%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: POU2F2, POU5F1, TOP2A, CRY1, ZFX, POU4F2, NME2, XBP1, DUX4, MAFF, FOXA1, MLLT3, CDK9, ERG, RELA, RUNX2, GATA4, TCF4, HIF1A, GABPA, PAX5, TP63, SPIB, ZNF26, CREB1, EZH2, OCA2, MYOD1, EGR2, PHOX2B, ELF3, MAFK, SPI1, MYF5, AR, FLI1, NCOR2
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 5
- Related genes and loops