- Basic information
- CohesinDB ID: CDBP00415615
- Locus: chr21-27021023-27022821
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Data sourse: GSE116344, GSE206145-NatGen2015, GSE120943
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Cell type: Fibroblast, RH4, Monocytes
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.967
- Subunit: Mau2,SA1,Rad21,SMC1
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
38% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 82%,
"7_Enh": 10%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: FOXA2, POU5F1, CEBPA, NKX2-2, SOX2, NFATC1, XBP1, ERG, PAX6, RELA, JUNB, RUNX2, RAD21, PRDM9, GABPA, STAT3, ZSCAN4, NKX3-1, MAFB, MED1, KLF4, CEBPB, NR3C1, NCOA3, ZNF573, ESR1, GRHL2, PHOX2B, CTCF, NUP98-HOXA9, REST, BRD4, PDX1
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 15
- Related genes and loops