- Basic information
- CohesinDB ID: CDBP00415623
- Locus: chr21-27054721-27054981
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Data sourse: ENCSR000BLD, GSE105028, ENCSR000BLY, GSE138405
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Cell type: H1-hESC, Hela-Kyoto, SK-N-SH, H9-hESC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.956
- Subunit: SA1,Rad21
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
38% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 85%,
"9_Het": 14%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: CTCF, RAD21
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 3
- Related genes and loops
- Related gene:
- Related loop:
chr21:26850000-26875000~~chr21:27025000-27050000,
chr21:27025000-27050000~~chr21:27200000-27225000,
chr21:27025000-27050000~~chr21:27550000-27575000,
chr21:27025000-27050000~~chr21:27675000-27700000,
chr21:27025000-27050000~~chr21:27700000-27725000,
chr21:27050000-27075000~~chr21:27200000-27225000,
chr21:27050000-27075000~~chr21:27300000-27325000,
chr21:27050000-27075000~~chr21:27550000-27575000,
chr21:27050000-27075000~~chr21:27675000-27700000,
chr21:27050000-27075000~~chr21:28325000-28350000,