- Basic information
- CohesinDB ID: CDBP00415627
- Locus: chr21-27061410-27063195
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Data sourse: GSE206145, GSE116344, GSE206145-NatGen2015, GSE86191
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Cell type: RPE, RH4, Fibroblast, HCT-116
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.956
- Subunit: Mau2,Rad21,SA2
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
38% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 73%,
"9_Het": 21%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: RUNX1, ZNF426, GTF2B, ZBTB48, FOXA1, HOXB13, ERG, RUNX2, ARNT, GRHL3, GABPA, STAT3, TAL1, MED1, NR3C1, MYB, SETDB1, ZNF34, BAF155, AR, BRD4, FOXP1, AATF, BRCA1
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 23
- Related genes and loops