- Basic information
- CohesinDB ID: CDBP00415628
- Locus: chr21-27070913-27071613
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Data sourse: GSE206145, ENCSR917QNE
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Cell type: Liver, HEK293T
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: Rad21,SA2
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
38% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 92%,
"7_Enh": 6%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: RUNX1, FOXO1, PGR, ZNF316, FOXA2, NKX2-2, SS18, ZFX, FOXA1, FOXF1, HOXB13, SMARCC1, ZNF300, ERG, RELA, ZNF384, MCM5, GATA4, SMARCA4, ARNT, OTX2, GATA3, GABPA, PAX5, MAFB, NKX3-1, SPIB, MED1, NR3C1, ESRRA, CEBPB, TCF7L2, PIAS1, ESR1, C11orf30, EBF3, PHOX2B, CTCF, NUP98-HOXA9, BRD2, BAF155, SPI1, AR, PAX8, GATA2, SIX2, ASH2L, FOXP1, TBX2, PDX1, TFAP2C
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 11
- Related genes and loops