- Basic information
- CohesinDB ID: CDBP00415678
- Locus: chr21-27267979-27270614
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Data sourse: ENCSR000EFJ, ENCSR230ZWH, GSE138405, ENCSR000HPG, ENCSR000BLY, GSE206145, GSE85526, GSE206145-NatGen2015, ENCSR000EDE, GSE68388, ENCSR000ECS, GSE165895
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Cell type: RPE, Hela-Kyoto, Fibroblast, HEKn, HeLa-S3, IMR-90, SK-N-SH, Liver, HuCC-T1, HFFc6
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 8% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.889
- Subunit: NIPBL,SA1,Rad21,SMC1,SA2,Mau2,SMC3
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
36% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"15_Quies": 64%,
"7_Enh": 20%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: RUNX1, FOXO1, SKI, PGR, SMC1A, FOXA2, EZH2phosphoT487, CEBPA, POU5F1, SOX2, E2F7, TOP2A, SMAD3, MAFF, STAT1, FOXA1, RELA, JUNB, ATF3, RUNX2, ETS1, GATA4, RAD21, CHD7, DAXX, PBX4, ARNT, RXRA, NKX2-1, ATF2, GATA3, SPI1, STAT3, MAX, TP63, PBX3, FOS, CDK8, MED1, VDR, NR3C1, CEBPB, JMJD1C, NR2F2, SPDEF, CEBPD, CREB1, KLF6, ETV1, NFE2L2, KDM5B, TRIM28, HNF1B, MYB, NFKB1, MYOD1, ELF3, ZHX2, JUN, SP1, EP300, MAFK, TCF12, AR, IRF1, BHLHE40, TAF1, HDAC2, GATA2, REST, TRIM24, ATF7, E2F4, JUND, BRD4, E2F1, MAZ, TEAD4, FOSL2
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 34
- Related genes and loops