- Basic information
- CohesinDB ID: CDBP00415693
- Locus: chr21-27338733-27339220
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Data sourse: GSE206145-NatGen2015
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Cell type: Fibroblast
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 0% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.989
- Subunit: SA2
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
36% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 95%,
"9_Het": 2%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: RUNX1, FOXO1, TRP47, POU2F2, PGR, FOXA2, TOP2A, NME2, XBP1, ZBTB48, WT1, FOXA1, FOXF1, HOXB13, SMARCC1, KDM1A, ERG, RELA, PAX6, ZNF384, ASCL1, OGG1, NEUROD1, GATA4, SP140, ARNT, OTX2, GATA3, GABPA, TAL1, RCOR1, MED1, NR3C1, CEBPB, NR2F2, CREB1, PIAS1, LMO2, OCA2, EBF3, MAFK, EP300, BAF155, AR, NKX2-5, GATA2, ZNF777, NOTCH3, BRD4, FOXP1, ZNF34
- Target gene symbol (double-evidenced CRMs): LTN1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 3
- Related genes and loops