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Basic information

CohesinDB ID: CDBP00415750

Locus: chr21-27545617-27545987

Data sourse: ENCSR000EHX, ENCSR000BLY

Cell type: SK-N-SH

DNA Sequence of binding site: UCSC hg38

Cohesin category

Peak occupancy ratio: 0% samples have this site.

Cell specificity (0: conserved, 1: cell type specific): 0.989

Subunit: Rad21

CTCF binding site: non-CTCF CTCF motif: False

Genomic location: Intergenic

3D genome

TAD boundary: Boundary

Chromatin hubs: Hub

Hi-C loops: False Hi-ChIP loops: False ChIA-PET loops: True

Compartment: 36% Hi-C samples shows Compartment A

Cis-regulatory elements

Enhancer (Fantom5): non-Enhancer

Super enhancer (SEdb): False

Chromatin annotation: "15_Quies": 97%, "7_Enh": 2%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).

Co-bound Transcriptional factors: FOXA2, POU5F1, NKX2-2, SIN3A, FOXA1, HOXB13, TWIST1, SMARCC1, YY1, MEF2A, RELA, NOTCH1, NFIC, ISL1, GRHL3, OTX2, GATA3, STAT3, FOXM1, MAX, PBX3, HAND2, NR3C1, TCF12, EP300, BAF155, JUND, FOXP1, TEAD4, FOSL2

Target gene symbol (double-evidenced CRMs): .

Function elements

Human SNPs: .

Number of somatic mutations (coding): 0

Number of somatic mutations (non-coding): 3

Related genes and loops

Related gene:

eachgene

Deatailed information for cohesin site CDBP00415750