- Basic information
- CohesinDB ID: CDBP00415780
- Locus: chr21-27733980-27734822
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Data sourse: ENCSR000EFJ, GSE138405, ENCSR000HPG, GSE206145, GSE165895
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Cell type: RPE, Hela-Kyoto, IMR-90, HFFc6
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 2% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.956
- Subunit: NIPBL,Rad21,SMC1,SA2,Mau2,SMC3
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
36% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 91%,
"7_Enh": 6%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: E2F7, FOXF1, HOXB13, SMARCC1, RELA, USP7, JUNB, RUNX2, LHX2, PBX4, ATF2, TAL1, STAT3, FOS, RCOR1, NR3C1, CEBPB, JUN, MAFK, BHLHE40, ATF7, BRD4, TEAD4
- Target gene symbol (double-evidenced CRMs): LINC00113
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops