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Basic information

CohesinDB ID: CDBP00415784

Locus: chr21-27763406-27763661

Data sourse: GSE206145-NatGen2015

Cell type: Fibroblast

DNA Sequence of binding site: UCSC hg38

Cohesin category

Peak occupancy ratio: 0% samples have this site.

Cell specificity (0: conserved, 1: cell type specific): 0.989

Subunit: Mau2

CTCF binding site: non-CTCF CTCF motif: False

Genomic location: Intergenic

3D genome

TAD boundary: Boundary

Chromatin hubs: Hub

Hi-C loops: True Hi-ChIP loops: True ChIA-PET loops: True

Compartment: 24% Hi-C samples shows Compartment A

Cis-regulatory elements

Enhancer (Fantom5): non-Enhancer

Super enhancer (SEdb): False

Chromatin annotation: "15_Quies": 97%, "5_TxWk": 2%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).

Co-bound Transcriptional factors: FOXO1, NANOG, FOXA2, POU5F1, SOX2, DUX4, FOXA1, MEF2C, HOXB13, ERG, ZNF384, RUNX2, SMARCA4, GATA4, RAD21, PRDM1, CHD7, HIF1A, ARNT, GATA3, GABPA, STAT3, TP63, NKX3-1, CDK8, CEBPB, NR2F2, TRIM28, PIAS1, KDM5B, ESR1, TP53, SETDB1, PHOX2B, BAF155, HNF4A, SOX9, AR, GATA2, ASH2L, BRD4, FOXP1, ZNF440, TFAP2C

Target gene symbol (double-evidenced CRMs): LTN1

Function elements

Human SNPs: .

Number of somatic mutations (coding): 0

Number of somatic mutations (non-coding): 1

Related genes and loops

Related gene: ENSG00000198862,

eachgene

Deatailed information for cohesin site CDBP00415784