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Basic information

CohesinDB ID: CDBP00415788

Locus: chr21-27777140-27777868

Data sourse: GSE206145, GSE67783

Cell type: RPE, HSPC

DNA Sequence of binding site: UCSC hg38

Cohesin category

Peak occupancy ratio: 1% samples have this site.

Cell specificity (0: conserved, 1: cell type specific): 0.978

Subunit: Mau2,SA1

CTCF binding site: CTCF CTCF motif: False

Genomic location: Intergenic

3D genome

TAD boundary: Boundary

Chromatin hubs: Hub

Hi-C loops: True Hi-ChIP loops: False ChIA-PET loops: True

Compartment: 24% Hi-C samples shows Compartment A

Cis-regulatory elements

Enhancer (Fantom5): non-Enhancer

Super enhancer (SEdb): False

Chromatin annotation: "15_Quies": 80%, "7_Enh": 13%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).

Co-bound Transcriptional factors: PGR, CHD8, MYCN, ZFX, XBP1, FOXA1, RELA, CREBBP, RUNX2, MYC, GRHL3, HIF1A, ARNT, RXRA, MAX, ZNF449, ZNF143, CDK8, MITF, ARNTL, VDR, CEBPB, ESR1, OCA2, GRHL2, USF2, CTCF, JUN, USF1, ARRB1, SPI1, SP1, MNT, AR, HNF4A, GATA2, EGLN2, NOTCH3, BRD4, SCRT1, MAZ, SMC3, STAG1, TFAP2C

Target gene symbol (double-evidenced CRMs): .

Function elements

Human SNPs: .

Number of somatic mutations (coding): 0

Number of somatic mutations (non-coding): 9

Related genes and loops

Related gene:

eachgene

Deatailed information for cohesin site CDBP00415788