- Basic information
- CohesinDB ID: CDBP00415790
- Locus: chr21-27796163-27796894
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Data sourse: GSE67783, ENCSR000EHX, ENCSR000BLY, GSE165895
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Cell type: HSPC, SK-N-SH, HFFc6
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.967
- Subunit: SA1,Rad21,SMC1
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
24% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 85%,
"7_Enh": 9%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: FOXO1, NANOG, FOXA2, POU5F1, MYCN, CHD2, SOX2, FOXA1, FOXF1, SMARCC1, TWIST1, MYC, GATA4, SMARCA4, BRG1, RAD21, ISL1, CHD7, GATA3, SMARCE1, STAT3, FOS, RCOR1, HAND2, NR3C1, EBF3, TCF12, BRD4, FOXP1, TEAD4, TFAP2C
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 4
- Related genes and loops