- Basic information
- CohesinDB ID: CDBP00415800
- Locus: chr21-27820084-27820419
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Data sourse: GSE206145, GSE206145-NatGen2015, GSE67783
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Cell type: RPE, Fibroblast, HSPC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.967
- Subunit: SA1,Rad21,SA2
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
24% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 91%,
"5_TxWk": 6%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: ZNF394, FOXO1, ZNF426, ZNF697, TEAD4, MAFF, ZBTB48, ZNF101, FOXF1, FOXA1, ERG, RARA, JUNB, ZBTB8A, GATA4, ZFP64, FOXP2, GRHL3, HIF1A, PRDM12, ZNF781, ZNF518A, MAFB, NKX3-1, UBN1, FOS, ZNF143, HAND2, MED1, NR3C1, CEBPB, NR2F2, TEAD1, ZBTB11, NEUROG2, ETV1, NR1H2, HNF1B, C11orf30, GRHL2, NFKB1, MYOD1, ZNF292, PHOX2B, JUN, ZNF577, MAFK, EP300, AR, IRF1, GATA2, REST, SIX2, BRD4, ZNF623, ZC3H11A, ZNF555, ZNF34, ZNF316, FOSL2
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 5
- Related genes and loops