- Basic information
- CohesinDB ID: CDBP00415805
- Locus: chr21-27831150-27833026
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Data sourse: ENCSR000EFJ, GSE138405, GSE206145, GSE206145-NatGen2015, GSE165895
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Cell type: RPE, Hela-Kyoto, Fibroblast, IMR-90, HFFc6
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 4% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.944
- Subunit: NIPBL,SA1,Rad21,SMC1,SA2,Mau2
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
24% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 84%,
"7_Enh": 12%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: FOXO1, PGR, FOXA2, E2F7, NME2, FOXA1, FOXF1, HOXB13, SMARCC1, ERG, RELA, JUNB, RUNX2, GATA4, SMARCA4, RAD21, LHX2, PRDM1, OTX2, GATA3, NKX2-1, STAT3, PAX5, PBX3, NKX3-1, FOS, MED1, TLE3, NR3C1, CEBPB, CREB1, PIAS1, GRHL2, TCF12, BAF155, AR, GATA2, FOXP1, FOSL2
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 11
- Related genes and loops