- Basic information
- CohesinDB ID: CDBP00415808
- Locus: chr21-27839385-27840085
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Data sourse: ENCSR000BLY
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Cell type: SK-N-SH
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 0% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.989
- Subunit: Rad21
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: False
- Compartment:
24% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 92%,
"7_Enh": 4%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: FOXA2, TOP2A, FOXA1, HOXB13, ERG, YY1, RELA, JUNB, ATF3, RAD21, FANCD2, GRHL3, PBX4, SOX11, RXRA, GATA3, ATF2, GABPA, FOXM1, PBX3, NKX3-1, MED1, NR3C1, CREB1, PIAS1, T, TCF12, EP300, SP1, BAF155, HNF4A, AR, ATF7, ASH2L, JUND, BRD4, FOXP1, RELB, TEAD4
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 7
- Related genes and loops