Deatailed information for cohesin site CDBP00415839
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- Basic information
- CohesinDB ID: CDBP00415839
- Locus: chr21-28008238-28009187
- Data sourse: ENCSR000BLY, ENCSR404BPV, ENCSR000EHW, GSE206145-NatGen2015, ENCSR198ZYJ, ENCSR000EHX
- Cell type: Neurons-H1, Fibroblast, SK-N-SH
- DNA Sequence of binding site: UCSC hg38
- Cohesin category
- Peak occupancy ratio: 2% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.967
- Subunit: Mau2,SMC3,Rad21
- CTCF binding site: non-CTCF CTCF motif: False
- Genomic location: TSS,Intergenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
- Hi-C loops: True Hi-ChIP loops: True ChIA-PET loops: True
- Compartment: 35% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
-
Chromatin annotation:
"15_Quies": 93%,
"5_TxWk": 4%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2). - Co-bound Transcriptional factors: SMARCA4, OTX2, NEUROD1, MXI1
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 8
- Related genes and loops
- Related gene:
- Related loop: chr21:13275000-13300000~~chr21:28000000-28025000, chr21:13300000-13325000~~chr21:28000000-28025000,
Tools:
- Assay
