- Basic information
- CohesinDB ID: CDBP00415860
- Locus: chr21-28078861-28079357
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Data sourse: GSE98367, ENCSR000BLY, ENCSR404BPV, GSE120943, ENCSR000EHX
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Cell type: Neurons-H1, Monocytes, Macrophage, SK-N-SH
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.956
- Subunit: SMC3,Rad21,SMC1
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
35% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"15_Quies": 98%,
"9_Het": 1%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: PGR, SOX2, FOXA1, PBX2, ATF3, ATF4, ZSCAN4, HDAC3, CDX2, ESR1, OCA2, CTCF, TCF12, BAF155, EP300, GATA6, TEAD4, ZNF175, TFAP2C, NANOG, POU5F1, MYCN, DUX4, ZNF205, DDX5, ERG, MYC, RAD21, GRHL3, GABPA, NKX3-1, RCOR1, NR3C1, CEBPB, CREB1, EBF3, HDAC2, GATA2, FLI1, ZIM3, RUNX1, CTNNB1, CEBPA, SMARCC1, ZNF384, CDK6, GATA4, GR, ARNT, ATF2, PRDM9, PBX3, PIAS1, NCOA1, POU2F3, ASH2L, FOXP1, PAX7, FOXA2, CHD2, FOXF1, HOXB13, KDM1A, ZNF19, RELA, YY1, BRG1, ISL1, TCF4, OTX2, GATA3, TAL1, HAND2, TLE3, CEBPG, PKNOX1, PHOX2B, AR, TAF1, EGLN2, MAML3, NCOR1, BRD4, TBX2, AHR
- Target gene symbol (double-evidenced CRMs): LTN1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops
- Related gene:
ENSG00000198862,
- Related loop:
chr21:25600000-25625000~~chr21:28050000-28075000,
chr21:25625000-25650000~~chr21:28050000-28075000,
chr21:26825000-26850000~~chr21:28050000-28075000,
chr21:26850000-26875000~~chr21:28050000-28075000,
chr21:27200000-27225000~~chr21:28050000-28075000,
chr21:27550000-27575000~~chr21:28050000-28075000,
chr21:27700000-27725000~~chr21:28050000-28075000,
chr21:27750000-27775000~~chr21:28050000-28075000,
chr21:28050000-28075000~~chr21:28225000-28250000,
chr21:28050000-28075000~~chr21:28300000-28325000,
chr21:28050000-28075000~~chr21:28325000-28350000,
chr21:28050000-28075000~~chr21:28500000-28525000,
chr21:28050000-28075000~~chr21:28525000-28550000,
chr21:28050000-28075000~~chr21:28725000-28750000,
chr21:28050000-28075000~~chr21:28925000-28950000,
chr21:28075000-28100000~~chr21:28225000-28250000,
chr21:28075000-28100000~~chr21:28300000-28325000,
chr21:28075000-28100000~~chr21:28325000-28350000,
chr21:28075000-28100000~~chr21:28500000-28525000,
chr21:28075000-28100000~~chr21:28700000-28725000,
chr21:28075000-28100000~~chr21:28725000-28750000,
chr21:28075000-28100000~~chr21:28925000-28950000,