- Basic information
- CohesinDB ID: CDBP00415866
- Locus: chr21-28094978-28096008
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Data sourse: GSE62063
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Cell type: Ramos
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 0% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.989
- Subunit: NIPBL
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
-
Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
35% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
-
Chromatin annotation:
"15_Quies": 97%,
"5_TxWk": 2%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: GATA6, FOXA2, GRHL3, ARNT, DUX4, TAL1, ZNF175, SPI1
- Target gene symbol (double-evidenced CRMs): LTN1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops
- Related gene:
ENSG00000198862,
- Related loop:
chr21:28075000-28100000~~chr21:28225000-28250000,
chr21:28075000-28100000~~chr21:28300000-28325000,
chr21:28075000-28100000~~chr21:28325000-28350000,
chr21:28075000-28100000~~chr21:28500000-28525000,
chr21:28075000-28100000~~chr21:28700000-28725000,
chr21:28075000-28100000~~chr21:28725000-28750000,
chr21:28075000-28100000~~chr21:28925000-28950000,
chr21:28096589-28098118~~chr21:28335562-28338194,
chr21:28096733-28098046~~chr21:28741591-28743796,
chr21:28100000-28125000~~chr21:28225000-28250000,
chr21:28100000-28125000~~chr21:28300000-28325000,
chr21:28100000-28125000~~chr21:28325000-28350000,
chr21:28100000-28125000~~chr21:28425000-28450000,
chr21:28100000-28125000~~chr21:28500000-28525000,
chr21:28100000-28125000~~chr21:28725000-28750000,