- Basic information
- CohesinDB ID: CDBP00415875
- Locus: chr21-28110565-28112466
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Data sourse: ENCSR000EFJ, ENCSR230ZWH, GSE165895, ENCSR000BLY, ENCSR000EHW, GSE206145-NatGen2015, GSE62063, GSE206145, ENCSR000EHX, GSE83726, GSE116344, ENCSR917QNE
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Cell type: RPE, Fibroblast, RH4, IMR-90, SK-N-SH, Liver, HFFc6, Ramos
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 10% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.911
- Subunit: NIPBL,SA1,Rad21,SMC1,SA2,Mau2,SMC3
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: TES,Intragenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
35% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"15_Quies": 51%,
"7_Enh": 16%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: FOXO1, PGR, FOXA2, MYCN, E2F7, CHD2, SOX2, SIN3A, ZFX, EZH2phosphoT487, POU5F1, FOXF1, ZBTB33, TWIST1, SMARCC1, KDM1A, YY1, MEF2A, RELA, RARA, PAX6, SP140, NEUROD1, MYC, NFIC, SMARCA4, ISL1, FOXP2, GRHL3, HIF1A, TCF4, RXRA, OTX2, HMGB2, RAD21, CHD7, ARNT, STAT3, MAX, PBX3, FOXM1, TAL1, GATA3, RCOR1, LHX2, HAND2, MED1, ARNTL, NR3C1, MYOG, CEBPB, NR2F2, ETV1, NEUROG2, ESR1, PITX3, TBX5, MYOD1, EBF3, PHOX2B, CTCF, TCF12, USF1, SP1, EP300, JUN, AR, TAF1, REST, GATA2, IRF4, MAML3, SIX2, NOTCH3, MXI1, BRD4, JUND, TEAD4, TBX2, MYF5, HMGB1, FOSL2
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: Diverticular_disease
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 7
- Related genes and loops