- Basic information
- CohesinDB ID: CDBP00415876
- Locus: chr21-28113612-28114137
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Data sourse: GSE62063, ENCSR000BLY
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Cell type: SK-N-SH, Ramos
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: NIPBL,Rad21
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: TES
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
35% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"15_Quies": 95%,
"5_TxWk": 4%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: PGR, FOXA2, NKX2-2, POU4F2, FOXA1, FOXF1, BAHD1, HOXB13, ERG, RARA, NFIC, GR, ISL1, HIF1A, GATA3, PBX3, FOS, NR3C1, ESRRA, CREB1, PIAS1, ESR1, TRPS1, PHOX2B, T, TCF12, AR, GATA2, CTBP2, JUND, BRD4, CUX1, TEAD4, PDX1, TFAP2C, FOSL2
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 2
- Related genes and loops