- Basic information
- CohesinDB ID: CDBP00415879
- Locus: chr21-28126852-28127852
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Data sourse: GSE206145-NatGen2015, GSE62063
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Cell type: Fibroblast, Ramos
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: NIPBL,SA2,Mau2
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
35% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"15_Quies": 88%,
"7_Enh": 8%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: FOXO1, POU2F2, MAFG, SMC1A, FOXA2, NKX2-2, SOX2, GTF2B, MAFF, DUX4, FOXA1, HOXB13, RELA, GATA4, GRHL3, TAL1, MAFB, NKX3-1, MED1, NR3C1, CEBPB, NR2F2, SCRT2, TP53, ESR1, C11orf30, ZNF334, CTCF, MAFK, AR, GATA6, FLI1, BRD4, PDX1, ZNF316
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 5
- Related genes and loops