- Basic information
- CohesinDB ID: CDBP00415886
- Locus: chr21-28148418-28148772
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Data sourse: GSE165895, GSE206145, ENCSR230ZWH, ENCSR917QNE
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Cell type: RPE, Liver, HFFc6
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.967
- Subunit: NIPBL,Rad21,SMC1
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
35% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"15_Quies": 88%,
"7_Enh": 9%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: RUNX1, PGR, POU2F2, FOXA2, POU5F1, NKX2-2, TOP2A, SIRT6, ZFX, RUNX1T1, ZSCAN16, XBP1, ZBTB48, DUX4, NME2, FOXA1, SOX2, SUZ12, HOXB13, TWIST1, HNF4G, ERG, YY1, NFIC, GR, RAD21, SP140, ARNT, HIF1A, GATA3, GABPA, MAX, NKX3-1, GATA1, HAND2, TLE3, ZNF750, CEBPB, TEAD1, CREB1, TCF7L2, PIAS1, EZH2, KDM5B, ESR1, OCA2, SETDB1, MYOD1, PHOX2B, CTCF, ELF3, SPI1, BAF155, AR, GATA2, SIX2, NOTCH3, BRD4, FOXP1, NCOR2, TFAP2C
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops