- Basic information
- CohesinDB ID: CDBP00415891
- Locus: chr21-28167359-28167515
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Data sourse: ENCSR000BTQ, GSE72082
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Cell type: MCF-7
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 0% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.989
- Subunit: Rad21
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
35% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 95%,
"7_Enh": 2%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: RUNX1, NANOG, PGR, SMC1A, FOXA2, ZNF316, SIN3A, SOX2, FOXA1, HOXB13, ERG, ZXDC, JUNB, GATA4, GR, ISL1, RAD21, ARNT, GATA3, GABPA, TAL1, NKX3-1, NR3C1, TEAD1, PIAS1, ESR1, C11orf30, EBF3, TRPS1, PHOX2B, CTCF, TCF12, MAFK, EP300, BCL11A, SPI1, AR, HDAC2, GATA2, JUND, FOXP1, TEAD4, TBX2, AHR
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops