- Basic information
- CohesinDB ID: CDBP00415896
- Locus: chr21-28196422-28197023
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Data sourse: ENCSR000BLD, GSE72082, ENCSR000BLY, GSE105028, GSE25021, GSE131606, ENCSR000EDW, ENCSR000BTU, GSE67783, GSE86191, GSE101921, GSE206145-NatGen2015, GSE116344, GSE94872, ENCSR000EEG, ENCSR000BLS, GSE206145, ENCSR000ECE, GSE97394, ENCSR167MTG, ENCSR054FKH, GSE83726
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Cell type: RPE, H1-hESC, Fibroblast, HCT-116, RH4, Hep-G2, Ishikawa, HUVEC, HCAEC, DKO, HUES64, SK-N-SH, HSPC, H9-hESC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 7% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.844
- Subunit: SA1,Rad21,SMC1,SA2,SMC3
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CTCF binding site: CTCF
CTCF motif: True
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
35% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 89%,
"9_Het": 10%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: CTCF, RAD21
- Target gene symbol (double-evidenced CRMs): LTN1,LINC00113
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops
- Related gene:
ENSG00000225298,
ENSG00000198862,
- Related loop:
chr21:15575000-15600000~~chr21:28200000-28225000,
chr21:26825000-26850000~~chr21:28200000-28225000,
chr21:27300000-27325000~~chr21:28200000-28225000,
chr21:27750000-27775000~~chr21:28175000-28200000,
chr21:28017763-28020776~~chr21:28192629-28193898,
chr21:28175000-28200000~~chr21:28325000-28350000,
chr21:28175000-28200000~~chr21:28575000-28600000,
chr21:28175000-28200000~~chr21:28725000-28750000,
chr21:28175000-28200000~~chr21:28925000-28950000,
chr21:28200000-28225000~~chr21:28300000-28325000,
chr21:28200000-28225000~~chr21:28725000-28750000,