- Basic information
- CohesinDB ID: CDBP00415910
- Locus: chr21-28256232-28258652
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Data sourse: ENCSR167MTG, ENCSR000EEG, ENCSR338DUC, ENCSR230ZWH, GSE72082, GSE73207, GSE165895, GSE76815, GSE76893, ENCSR000BLY, ENCSR000BLS, ENCSR000EHW, GSE206145-NatGen2015, ENCSR054FKH, ENCSR000EHX, ENCSR635OSG, GSE68388, GSE25021, ENCSR000EDW, ENCSR917QNE
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Cell type: Fibroblast, Hep-G2, TF-1, SK-N-SH, Liver, HuCC-T1, HFFc6
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 8% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.922
- Subunit: NIPBL,SA1,Rad21,SMC1,SA2,Mau2,SMC3
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: False
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
35% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"15_Quies": 73%,
"7_Enh": 17%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: FOXO1, NFIA, PGR, HMG20A, SOX2, HNF1A, FOXA1, HLF, RXRB, KDM3A, TFAP4, THRB, ATF3, NFIC, HNRNPUL1, CHD7, PRDM1, MXD4, CDX2, TEAD1, TRIM28, KLF6, KLF10, RCOR2, ESR1, HNF1B, PITX3, TCF12, BAF155, EP300, SOX5, GATA6, RFX3, TEAD4, FOXA3, ZNF175, GATAD2A, PDX1, MLX, RBPJ, NANOG, MYCN, GATAD1, SAP130, ARID3A, TBP, HNF4G, ERG, ETS1, HOMEZ, ARID1B, LHX2, RAD21, RXRA, FOXK2, GABPA, ZNF614, NKX3-1, MIER3, RCOR1, NR2F6, NFE2, NR3C1, CEBPB, CREB1, TBL1XR1, ZNF652, EBF3, TRPS1, GABPB1, SPI1, MIXL1, TFE3, IRF1, HDAC2, GATA2, ZNF644, DRAP1, ZGPAT, MXI1, NFIL3, ETV5, RUNX1, THAP11, BCL6, SMC1A, CEBPA, NKX2-2, SOX13, TBX3, SP5, SMARCC1, TWIST1, MYBL2, RARA, NFYC, GATA4, PBX4, ZNF48, SMAD4, PBX3, FOS, HMGXB4, SMARCB1, MED1, TEAD3, PIAS1, ZNF3, USF1, SP1, NIPBL, TFAP2A, HNF4A, IKZF5, REST, ATF7, ASH2L, FOXP1, STAG1, ETV4, ZNF394, SKI, PPARG, FOXA2, CREM, CHD2, MIER2, GTF2B, MAFF, ZBTB33, TCF7, HOXB13, ZNF580, KDM1A, YY1, RELA, AHR, ISL1, TCF4, GATA3, TAL1, MAX, HAND2, CEBPG, KLF4, NR2F2, TCF7L2, PHOX2B, ELF3, PHF5A, KAT8, NFKBIZ, AR, ARID4B, TAF1, MAML3, EGR1, ZBTB26, BRD4, JUND, TBX2, DMAP1, FOSL2
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 14
- Related genes and loops