- Basic information
- CohesinDB ID: CDBP00415913
- Locus: chr21-28268718-28270317
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Data sourse: ENCSR230ZWH, ENCSR000BLY, ENCSR000EHW, ENCSR000EHX, ENCSR917QNE
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Cell type: Liver, SK-N-SH
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: SMC3,Rad21
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: False
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
35% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"15_Quies": 93%,
"7_Enh": 4%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: FOXO1, PGR, FOXA2, NKX2-2, CEBPA, CHD2, MYCN, LDB1, DUX4, FOXA1, ZBTB33, HOXB13, TWIST1, SMARCC1, ERG, YY1, KDM1A, RARA, ATF3, ISL1, RAD21, TCF4, RXRA, GATA3, PBX3, TP63, NKX3-1, RCOR1, HAND2, TLE3, NR2F2, CEBPD, CREB1, SCRT2, PIAS1, ETV1, PITX3, EBF3, PHOX2B, NUP98-HOXA9, TCF12, BAF155, SP1, EP300, HNF4A, AR, GATA6, GATA2, ARID1A, MAML3, RFX5, MXI1, BRD4, SCRT1, JUND, TEAD4, TBX2
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 10
- Related genes and loops